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Columbia University in the City of New York
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Fairchild Building
Room 1117
Tel 212-854-4647
E-mail jlm2@columbia.edu
Web: James Manley's lab page
RESEARCH THEME: Mechanisms and regulation of gene expression Our laboratory studies several aspects of gene expression in animal cells. These include transcription of mRNA encoding genes, mRNA splicing, and mRNA polyadenylation. All three of these processes occur in the cell nucleus and require numerous protein (and in the case of splicing, RNA) factors that assemble into massive multi-subunit complexes. It is our goal to understand how the complexes assemble and function on the DNA template or pre-mRNA substrate, and to learn how these important molecules act to regulate gene expression and how they themselves are controlled. These studies involve a large number of experimental approaches, including a variety of in vitro assays, biochemical fractionation and protein purification, cDNA and genomic DNA cloning, production of recombinant proteins and antibodies, in vitro mutagenesis, and genetic analyses using a variety gene targeting approaches.

EDUCATION AND TRAINING:
1971

B.S. Columbia University

1976

Ph. D. State University of New York, Stony Brook, NY



HONORS AND AWARDS :
1976

Anna Fuller Fellowship

1990

Brockman Memorial Lecture, University of Michigan

1996-

NIH MERIT Award (mRNA splicing)

1998

ASBMB- Plenary Lecturer

2002

American Academy of Microbiology (elected)

2005-

ISI Highly Cited Researcher

   
1983-1985 Editorial Board, Nucleic Acids Research
1984-2001 Editorial Board, Molecular Cell Biology
1988-

Editorial Board, Genes and Development

1989-1992 Editorial Board, Techniques
1991-1995

Editorial Board, Mechanisms of Development

1991-

Associate Editor, Gene Expression

1993-1998

Editorial Board, Journal of Virology

1994-

Editorial Board, RNA

1997-

Editorial Board, Molecular Cell

2001-

Editorial Advisor, BioMedCentral-Mol. Biol

2003-

Editor, Molecular Cell Biology

2003-

Editorial Board, BioMedCentral-Biology



SELECTED PUBLICATIONS :
  • Kashima, T. and Manley, J.L. (2003). A negative element in SMN2 exon 7 inhibits splicing in Spinal Muscular Atrophy. Nature Genetics 34, 460-463.
  • Xu, Y., Hirose, Y., Zhou, X., Lu, K.P. and Manley, J.L. (2003). Pin1 modulates the structure and function of RNA polymerase II. Genes Dev. 17, 2765-2776.
  • Shin, C., Feng, Y. and Manley, J.L. (2004). Dephosphorylated SRp38 acts as a splicing repressor in response to heat shock. Nature 427, 553-558.
  • Kleiman, F.E., Wu-Baer, F., Kaneko, S., Baer, R. and Manley, J.L. (2005). BRCA1/BARD1 inhibition of 3' processing involves targeted degradation of RNA polymerase II. Genes Dev. 19, 1227-1237.
  • Li, X. and Manley, J.L. (2005). Inactivation of the SR protein splicing factor ASF/SF2 results in genomic instability. Cell 122, 365-78.
  • Li, X., Wang, J. Kashima, T. and Manley, J.L. (2005). Loss of splicing factor ASF/SF2 induces cell- cycle arrest and apoptosis, but inhibits internucleosomal DNA fragmentation. Genes Dev.